About EURASIP Journal on Bioinformatics and Systems Biology

This page includes information about the aims and scope of EURASIP Journal on Bioinformatics and Systems Biology, editorial policies, open access and article-processing charges, the peer review process and other information. For details of how to prepare and submit a manuscript through the online submission system, please see the instructions for authors.

Aims & scope

The overall aim of EURASIP Journal on Bioinformatics and Systems Biology is to publish research results related to signal processing and bioinformatics theories and techniques relevant to a wide area of applications into the core new disciplines of genomics, proteomics, and systems biology.

The journal is intended to offer a common platform for scientists from several areas including signal processing, bioinformatics, statistics, biology and medicine, who are interested in the development of algorithmic, mathematical, statistical, modeling, simulation, data mining, and computational techniques, as demanded by various applications in genomics, proteomics, system biology, and more general in health and medicine.

Articles should emphasize original results related to the theoretical and algorithmic aspects of signal processing and bioinformatics, in close connection with the applications to genomics, proteomics, systems biology and medicine. Tutorial articles, especially those emphasizing strong components of signal processing or bioinformatics in multidisciplinary views of genomics, proteomics and systems biology are also welcome. The journal will embrace a wide range of topics, and will accommodate different exposition styles, to help scientists with various backgrounds, e.g., engineering, bioinformatics, or biology, to interact effortlessly and to facilitate the exchange of information across the multidisciplinary areas involved. EURASIP Journal on Bioinformatics and Systems Biology employs a paperless, electronic submission and evaluation system to promote a rapid turnaround in the peer review process.

The journal is an Open Access journal since 2006.

Subject areas include (but are by no means limited to):

•  Reverse engineering of biological circuits
•  Data mining methods for genomics and proteomics
•  Signal Processing theory and techniques for systems biology
•  Modeling and simulation of biological networks
•  Nanotechnology in genomics and proteomics
•  Signal processing methods in sequence analysis
•  Information theoretic approaches to genomics and proteomics
•  Microarray image and data analysis
•  Noise models in high-throughput technologies
•  Integration of heterogeneous data

Open access

All articles published by EURASIP Journal on Bioinformatics and Systems Biology are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. Further information about open access can be found here.

Authors of articles published in EURASIP Journal on Bioinformatics and Systems Biology are the copyright holders of their articles and have granted to any third party, in advance and in perpetuity, the right to use, reproduce or disseminate the article, according to the SpringerOpen copyright and license agreement.

Article-processing charges

Open access publishing is not without costs. EURASIP Journal on Bioinformatics and Systems Biology therefore levies an article-processing charge of £445/$685/€525 for each article accepted for publication. Please note that EURASIP members receive a 10% discount on the APCs. Editorial Board Members receive a 50% discount. We also routinely waive charges for authors from low-income countries. We routinely waive charges for authors from low-income countries. Generally, if the submitting author's institution is a Member the cost of the article-processing charge is covered by the membership, and no further charge is payable. In the case of authors whose institutions are Supporter Members, however, a discounted article-processing charge is payable by the author. For further details, see our article-processing charge page.

Indexing services

SpringerOpen is working closely with Thomson Reuters (ISI) to ensure that citation analysis of articles published in EURASIP Journal on Bioinformatics and Systems Biology will be available.

Publication and peer review process

Authors will be able to check the progress of their manuscript through the submission system at any time by logging into My EURASIP Journal on Bioinformatics and Systems Biology, a personalized section of the site.

Portability of peer review

In order to support efficient and thorough peer review, we aim to reduce the number of times a manuscript is re-reviewed after rejection from EURASIP Journal on Bioinformatics and Systems Biology, thereby speeding up the publication process and reducing the burden on peer reviewers. Therefore, please note that, if a manuscript is not accepted for publication in EURASIP Journal on Bioinformatics and Systems Biology and the authors choose to submit a revised version to another SpringerOpen journal, we will pass the reviews on to the other journal's editors at the authors' request. We will reveal the reviewers' names to the handling editor for editorial purposes unless reviewers let us know when they return their report that they do not wish us to share their report with another SpringerOpen journal.

Copyediting and proofs

EURASIP Journal on Bioinformatics and Systems Biology will copyedit manuscripts before they are published.

Following the acceptance of an article, it is published in EURASIP Journal on Bioinformatics and Systems Biology as a provisional PDF file with minimal delay (subject to formatting checks, copyediting and author verification). Fully formatted PDF and full-text (HTML) versions are made available shortly after that.

Reprints

Please see our reprints website for information about reprinting articles.

Supplements

EURASIP Journal on Bioinformatics and Systems Biology will consider supplements based on proceedings (full articles or meeting abstracts), reviews or research. All articles submitted for publication in supplements are subject to peer review. Published supplements are fully searchable and freely accessible online and can also be produced in print. For further information, please contact us.

Editorial policies

Any manuscript, or substantial parts of it, submitted to the journal must not be under consideration by any other journal. In general, the manuscript should not have already been published in any journal or other citable form, although it may have been deposited on a preprint server. Authors are required to ensure that no material submitted as part of a manuscript infringes existing copyrights, or the rights of a third party.

Correspondence concerning articles published in EURASIP Journal on Bioinformatics and Systems Biology is encouraged. A 'post a comment' feature is available on all articles published by EURASIP Journal on Bioinformatics and Systems Biology. Comments will be moderated by the editorial office (see our Comment policy for further information) and linked to the full-text version of the article, if suitable.

Editorial standards

SpringerOpen is a member of the Committee on Publication Ethics (COPE). In order to safeguard the quality of SpringerOpen journal publications, Springer has developed a policy on Publishing Integrity which is in line with the philosophy of COPE.

We follow the principle that we have a prime duty to maintain the integrity of the scientific record. Springer’s Policy on Publishing Integrity addresses:

• Clear definitions of what violation of Publishing Integrity is.
• A manual on how to identify such a violation (in the document referred to as an Act of Misconduct).
• Clear (COPE) examples of what such an Act of Misconduct looks like in practice.
• Clearly defined actions which have to be undertaken by the Editor and Springer when such an Act is a clearly proven fact.
• Q & A – a useful list of Questions and Answers on the definition of Publishing Integrity.

Please find the full document of Springer’s Policy on Publishing Integrity here.

Data and materials release

Submission of a manuscript to EURASIP Journal on Bioinformatics and Systems Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article.

Any 'in press' articles cited within the references and necessary for the reviewers' assessment of the manuscript should be made available if requested by the editorial office.

Appeals and complaints

Authors who wish to appeal a rejection or make a complaint should, in the first instance, contact the Editor-in-Chief who will provide details of the journal's complaints procedure.

Competing interests

Submitting authors are asked to declare that they have observed the IZA Guiding Principles of Research Integrity. A statement confirming this will be added to all submitted articles.

Plagiarism detection

EURASIP Journal on Bioinformatics and Systems Biology's publisher, SpringerOpen, is a member of the CrossCheck plagiarism detection initiative. In cases of suspected plagiarism CrossCheck is available to the editors of EURASIP Journal on Bioinformatics and Systems Biology to detect instances of overlapping and similar text in submitted manuscripts by using the plagiarism detection tool iThenticate. CrossCheck is a multi-publisher initiative allowing screening of published and submitted content for originality.

Citing articles in EURASIP Journal on Bioinformatics and Systems Biology

Articles in EURASIP Journal on Bioinformatics and Systems Biology should be cited in the same way as articles in a traditional journal. Because articles are not printed, they do not have page numbers; instead, they are given a unique article number.

Article citations follow this format:

Authors: Title. EURASIP J Bioinform Syst Biol [year], [volume number]:[article number].

e.g. Roberts LD, Hassall DG, Winegar DA, Haselden JN, Nicholls AW, Griffin JL: Increased hepatic oxidative metabolism distinguishes the action of Peroxisome Proliferator-Activated Receptor delta from Peroxisome Proliferator-Activated Receptor gamma in the Ob/Ob mouse. EURASIP J Bioinform Syst Biol 2009, 1:115.

refers to article 115 from Volume 1 of the journal.

Why publish your article in EURASIP Journal on Bioinformatics and Systems Biology?

High visibility

EURASIP Journal on Bioinformatics and Systems Biology's open access policy allows maximum visibility of articles published in the journal as they are available to a wide, global audience. Articles that have been especially highly accessed are highlighted with a 'Highly accessed' graphic, which appears on the journal's contents pages and search results.

Speed of publication

EURASIP Journal on Bioinformatics and Systems Biology offers a fast publication schedule whilst maintaining rigorous peer review; all articles must be submitted online, and peer review is managed fully electronically (articles are distributed in PDF form, which is automatically generated from the submitted files). Articles are published with their final citation immediately upon acceptance in a provisional PDF form. The article will subsequently be published in both fully browsable web form, and as a formatted PDF; the article will then be available through EURASIP Journal on Bioinformatics and Systems Biology and SpringerOpen.

Flexibility

Online publication in EURASIP Journal on Bioinformatics and Systems Biology gives authors the opportunity to publish large datasets, large numbers of color illustrations and moving pictures, to display data in a form that can be read directly by other software packages so as to allow readers to manipulate the data for themselves, and to create all relevant links (for example to relevant databases and papers).

Promotion and press coverage

Articles published in EURASIP Journal on Bioinformatics and Systems Biology are included in article alerts and regular email updates. Some may be included in abstract books mailed to academics and are highlighted on EURASIP Journal on Bioinformatics and Systems Biology's pages and on the SpringerOpen homepage.

In addition, articles published in EURASIP Journal on Bioinformatics and Systems Biology may be promoted by press releases to the general or scientific press. These activities increase the exposure and number of accesses for articles published in EURASIP Journal on Bioinformatics and Systems Biology.

Copyright

Authors of articles published in EURASIP Journal on Bioinformatics and Systems Biology retain the copyright of their articles and are free to reproduce and disseminate their work (for further details, see the SpringerOpen copyright and license agreement).

For further information about the advantages of publishing in a journal from SpringerOpen, please click here.